PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01942-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 680aa    MW: 73928.4 Da    PI: 7.2457
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01942-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.3e-08585634147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E ellv+av++lG g+Wk + ++     + Rt  ++k++w ++
  TRIUR3_01942-P1 585 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFcdnEERTYVDLKDKWKNL 634
                      678999*****************************99**********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.18E-7401474IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873406470IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.902.3E-4407474No hitNo description
CDDcd017690.00377410475No hitNo description
PROSITE profilePS5129416.171580639IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-10581636IPR009057Homeodomain-like
SuperFamilySSF466891.45E-12582637IPR009057Homeodomain-like
SMARTSM007171.5E-8584637IPR001005SANT/Myb domain
PfamPF002498.3E-6585634IPR001005SANT/Myb domain
CDDcd116604.59E-15586636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032204Biological Processregulation of telomere maintenance
GO:0042162Molecular Functiontelomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST  60
ESDQDGAEAS HNSDRIAVKS EQFDEAPQLN STALENDCSR GYTVGCDGIC ASLGQTSIRK  120
TEDLSTQNVA DTVEGSLIEK ADADNLLTQN IADAAAEPLI EKKPDVFAEG SLVSCTKPSL  180
LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQATPAIIGS LVDGNAAALH GLVDTMDLDI  240
KPSVLNSESS SGVHLGGHDN GHKASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL  300
SYKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFCGKKI SATRRRAQMQ RMLKTKKVVE  360
CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA SEGCNVKFII KSFNIPELSI  420
EVPENATVGS LKRIVMDAVT SKIEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG  480
FTLECEAKQD SRPSGLAPEE MDSAGPSVVN PLSKISYTPP FSRIKFEQPF ISCTLGDYPY  540
EGAAQVRSEI CQAIVPYGTS NPDALAIVPV VPRSRQRDFG QRRKRRPFSV AEVELLVEAV  600
ELLGFGRWKN VKNHAFCDNE ERTYVDLKDK WKNLVHTASI PPQLRRGRAI PPQDLLDRVL  660
AAQAYWTVHH AKRDEEEGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A4e-425566683113Telomere binding protein-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733770.0AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757203.10.0PREDICTED: telomere-binding protein 1-like isoform X1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLM7YL880.0M7YL88_TRIUA; Telomere-binding protein 1
STRINGMLOC_53202.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-53TRF-like 2